Installation Instructions
==================================


Dependencies
------------

Package has been tested with Python 3.7

Package has the following dependencies:

numpy (v1.18.1)

sklearn (v0.22.1)

pandas (v1.0.1)

dill (v0.3.1.1)

scipy (v1.4.1)

pyteomics (v4.2)

requests (v0.4.0)

lxml (v4.5.0)

In order to process vendor formatted data without manual conversion, `MS-Convert <http://proteowizard.sourceforge.net/tools.shtml>`_) needs to be installed and added to PATH.


Install from Source
-------------------

via commandline::

    git clone https://github.com/e-stan/DecoID.git
    pip install DecoID/src/.


Install from pip (recommended)
------------------------------

via commandline::

    pip install DecoID