Welcome to DecoID’s documentation!

Contents:

• DecoID Usage
  • Input Files
    • MS/MS datafile
    • Peak Information
    • Database
  • Output Files
  • Example Usage
  • Advanced Usage
    • Changing Deconvolution Parameters
    • High Performance Computing
    • Connection to mzCloud
    • Parallel Usage with MS-DIAL
• DecoID API Documentation
  • Core DecoID
  • Other Helpful Functions
• Installation Instructions
  • Dependencies
  • Install from Source
  • Install from pip (recommended)

About DecoID

DecoID is a Python package for analyzing, identifying, and deconvolving metabolomic MS/MS spectra using reference databases.

Contact

Please email estancliffe@wustl.edu with any questions or issues